MetNetComp systematic download How to download files systematically.

By specifying a model and a target metabolite using the following URLs, you can download CSV files containing a list of gene deletion strategies and equivalent genes; and JSON files for reaction rates.

URL form
CSV files for minimal gene deletion strategies
https://metnetcomp.github.io/database1/csv/<model>&<target metabolite>.csv

CSV files for maximal gene deletion strategies
https://metnetcomp.github.io/database1/csv/<model>&<target metabolite>&core.csv

CSV files for equivalent genes
https://metnetcomp.github.io/database1/csv/<model>&equivalentGenes.csv

JSON files for reaction rates for minimal gene deletion strategies
https://metnetcomp.github.io/database1/json/<model>&<target metabolite>&minimal&<id>.json

JSON files for reaction rates for maximal gene deletion strategies
https://metnetcomp.github.io/database1/json/<model>&<target metabolite>&core.json

<model>
list of models

<target metabolite>
list of target metabolites

The CSV and JSON files can only be downloaded when gene deletion strategies have been determined.

Example

https://metnetcomp.github.io/database1/csv/e_coli_core&succ_e.csv
https://metnetcomp.github.io/database1/csv/iML1515&btn_c.csv
https://metnetcomp.github.io/database1/csv/iML1515&btn_c&core.csv
https://metnetcomp.github.io/database1/csv/iML1515&equivalentGenes.csv
https://metnetcomp.github.io/database1/json/iML1515&btn_c&minimal&1.json
https://metnetcomp.github.io/database1/json/iML1515&btn_c&core.json

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Last updated: 27-Sep-2023
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